Claims Analysis
Total Claims: 27
Claim 1
Independent Claim
169 words
A reagent having the formula: ##STR7## wherein M is selected from the group consisting of hydrogen, aluminum, silicon, phosphorus, gallium, germanium, cadmium, scandium, magnesium, tin, and zinc; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen.
Claim 2
Dependent Claim
169 words
A reagent having the formula: ##STR7## wherein M is selected from the group consisting of hydrogen, aluminum, silicon, phosphorus, gallium, germanium, cadmium, scandium, magnesium, tin, and zinc; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen.
Claim 3
Dependent Claim
32 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is a C 1 -C 7 saturated or unsaturated, straight chain, branched, or cyclic hydrocarbon moiety.
Claim 4
Dependent Claim
25 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is a polyether, polyamine, polyalcohol, sugar, peptide, or nucleotide.
Claim 5
Dependent Claim
87 words
A reagent according to claim 1, wherein W is --OH, --CO 2 H, --OCH 2 CO 2 H, --PO 4 .sup.═, --PO 3 - , --SO 3 - , --SO 2 - , --SO 2 Cl, --SO 4 .sup.═, --NH 2 , --NHD, --NHD 1 D 2 , or --N + D 1 D 2 D 3 , wherein D, D 1 , D 2 , and D 3 are independently C 1 -C 10 alkyl, C 6 -C 12 aryl, or C 6 -C 12 aralkyl.
Claim 6
Dependent Claim
28 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is C 1 -C 3 alkylene and W is sulfonate or carboxylate.
Claim 7
Dependent Claim
23 words
A reagent according to claim 5, wherein --XYW is substituted at 1-4 of the 1, 8, 15, and 22 positions on the macrocycle.
Claim 8
Dependent Claim
23 words
A reagent according to claim 5, wherein --XYW is substituted at 1-4 of the 2, 9, 16, and 23 positions on the macrocycle.
Claim 9
Dependent Claim
31 words
A reagent according to claim 1, wherein M is aluminum, and at least one R 1 is --XYW, wherein X is O or S, and W is sulfonate or sulfonyl chloride.
Claim 10
Dependent Claim
10 words
A reagent according to claim 8, wherein Y is phenyl.
Claim 11
Dependent Claim
27 words
A reagent according to claim 1, comprising aluminum phthalocyanine 1, 8, 15, 22-tetraglycolic acid, or aluminum phthalocyanine 2, 9, 16, 23-tetraglycolic acid, linked to R 2 .
Claim 12
Dependent Claim
41 words
A reagent according to claim 1, comprising 2, 9, 16, 23 tetraphenoxy aluminum phthalocyanine, 1, 8, 15, 22 tetraphenoxy aluminum phthalocyanine, 2, 9, 16, 22 tetrathiophenyl aluminum phthalocyanine, or 1, 8, 15, 22 tetrathiophenyl aluminum phthalocyanine, linked to R 2 .
Claim 13
Dependent Claim
47 words
A reagent according to claim 1, wherein R 2 is --A or --Y'A, and wherein A is a nucleic acid selected from the group consisting of ATP, CTP, GTP, TTP, UTP, dATP, dCTP, dGTP, dTTP, dUTP, ddATP, ddCTP, ddGTP, ddTTP, ddUTP, and derivatives thereof, oligonucleotides, and polynucleotides.
Claim 14
Dependent Claim
37 words
A kit for sequencing DNA, comprising: a plurality of containers, each containing a different reagent according to claim 1, wherein the different reagents are characterized by having a common excitation wavelength and different wavelengths of maximum emission.
Claim 15
Dependent Claim
24 words
A kit according to claim 13, wherein there are four reagents, and wherein each R 2 group comprises a different nucleotide, deoxynucleotide, or dideoxynucleotide.
Claim 16
Dependent Claim
15 words
A kit according to claim 14, wherein said reagents comprise reagents according to claim 10.
Claim 17
Dependent Claim
15 words
A kit according to claim 14, wherein said reagents comprise reagents according to claim 11.
Claim 18
Dependent Claim
53 words
A kit for sequencing DNA comprising: each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTPT as A labeled with a reagent according to claim 1, a sequencing enzyme, a sequencing primer, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 19
Dependent Claim
42 words
A kit for sequencing DNA comprising: a reagent according to claim 1 wherein A is DNA sequencing primer, a sequencing enzyme, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 20
Dependent Claim
62 words
A kit for sequencing DNA comprising: a plurality of container, each containing a different reagent according to claim 1 attached to a different one of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP as A, a sequencing enzyme, a sequencing primer, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 21
Dependent Claim
50 words
A kit for sequencing DNA comprising: a plurality of containers, each containing a different reagent according to claim 1 attached to a sequencing primer as A, a sequencing enzyme, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 22
Dependent Claim
174 words
An organometallic reagent useful for magnetic resonance imaging, having the formula: ##STR8## wherein M is a paramagnetic metal or a radioactive metal; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen or --CR, wherein --R is H, alkyl, aryl, or aralkyl.
Claim 23
Dependent Claim
174 words
An organometallic reagent useful for magnetic resonance imaging, having the formula: ##STR8## wherein M is a paramagnetic metal or a radioactive metal; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen or --CR, wherein --R is H, alkyl, aryl, or aralkyl.
Claim 24
Dependent Claim
20 words
An organometallic reagent according to claim 21, wherein M is selected from the group consisting of gadolinium, manganese, and iron.
Claim 25
Dependent Claim
21 words
A fluorescent reagent according to claim 1, wherein R 2 is --A or --Y'A, and wherein the phthalocyanine macrocycle is monomeric.
Claim 26
Dependent Claim
45 words
A fluorescent reagent according to claim 23 having absorbance in both the red and blue portions of the spectrum, wherein the ratio of the relative heights of the maximum red and blue absorbance peaks of the reagent, A(red)/A(blue), is greater than or equal to 1.4.
Claim 27
Dependent Claim
17 words
A fluorescent reagent according to claim 23, wherein M is aluminum, silicon, gallium, germanium, scandium, or tin.