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US5346670A Expired / Lapsed US ⏱️ 0.0 years remaining

Phthalocyanine and tetrabenztriazaporphyrin reagents

Assignee: SR ONE Ltd
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Filing: 1992-06-08
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Granted: 1994-09-13
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Expires: 2012-06-08
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Abstract

Abstract Red-shifted, water-soluble, fluorescent, monomerically-tetherable derivatives having the formula: elected from among the following metals: aluminum, silicon, phosphorus, gallium, germanium, cadmium, scandium, magnesium, tin, and zinc. Each R1 is independently selected from -XYW, -YW, and -W. X represents either a carbon, or heteroatom selected from among oxygen, nitrogen, sulfur, phosphorus, silicon, and selenium; Y represents a linking group; and W represents a water solubilizing group. The substituent R2 is selected from among -A, -Y'A, -XA, and -XY'A, where A denotes a biological entity such as an antibody, antibody fragment, nucleotide, nucleic acid probe, antigen, oligonucleotide, deoxynucleotide, dideoxynucleotide, avidin, streptavidin or membrane probe, or R2 is a reactive or activatable group suitable for conjugating to a biological entity. Y' is a linking group that tethers the biological entity to the phthalocyanine or tetrabenztriazaporphyrin macrocycle. Z is either a nitrogen atom or a carbon substituted with hydrogen, alkyl, aryl, or aralkyl groups. Z may also be attached to R2. Also disclosed are derivatives of the compounds of the above Formula in which 1-4 of the benzo ring(s) contain 1 or 2 N atoms. Methods of sequencing DNA and detecting analytes, including cells, using these derivatives are disclosed, as are kits for carrying out assays for the analytes and flow cytometry. Methods of detecting DNA using cationic compounds of the above Formula, wherein R2=R1 and W=-N+D1D2D3 are also disclosed. Further, compounds containing Tc, Gd, etc. as the metal in the above Formula may be used for imaging or therapy.

Inventors

  • 👤 George E. Renzoni
  • 👤 Deborah C. Schindele
  • 👤 Louis J. Theodore
  • 👤 Clifford C. Leznoff
  • 👤 Karen L. Fearon
  • 👤 Barry V. Pepich

Bibliographic Details

Application Number —
Jurisdiction US
Data Source google_patents
Last Synchronized 2026-11-02 18:36
CPC Classifications
G; G01; G01N; G01N33/00; G01N33/48; G01N33/50; G01N33/53; G01N33/531; G01N33/532; G01N33/533; A; A61; A61K; A61K41/00; A61K41/0057; A61K41/0071; C; C07; C07H; C07H21/00; Y; Y10; Y10S; Y10S435/00; Y10S435/808; Y10S435/968; Y10S436/00; Y10S436/807; Y10S436/808; Y10T; Y10T436/00; Y10T436/13

Claims Analysis

Total Claims: 27
Claim 1
Independent Claim 169 words
A reagent having the formula: ##STR7## wherein M is selected from the group consisting of hydrogen, aluminum, silicon, phosphorus, gallium, germanium, cadmium, scandium, magnesium, tin, and zinc; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen.
Claim 2
Dependent Claim 169 words
A reagent having the formula: ##STR7## wherein M is selected from the group consisting of hydrogen, aluminum, silicon, phosphorus, gallium, germanium, cadmium, scandium, magnesium, tin, and zinc; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen.
Claim 3
Dependent Claim 32 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is a C 1 -C 7 saturated or unsaturated, straight chain, branched, or cyclic hydrocarbon moiety.
Claim 4
Dependent Claim 25 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is a polyether, polyamine, polyalcohol, sugar, peptide, or nucleotide.
Claim 5
Dependent Claim 87 words
A reagent according to claim 1, wherein W is --OH, --CO 2 H, --OCH 2 CO 2 H, --PO 4 .sup.═, --PO 3 - , --SO 3 - , --SO 2 - , --SO 2 Cl, --SO 4 .sup.═, --NH 2 , --NHD, --NHD 1 D 2 , or --N + D 1 D 2 D 3 , wherein D, D 1 , D 2 , and D 3 are independently C 1 -C 10 alkyl, C 6 -C 12 aryl, or C 6 -C 12 aralkyl.
Claim 6
Dependent Claim 28 words
A reagent according to claim 1, wherein R 1 is --XYW or --YW and wherein Y is C 1 -C 3 alkylene and W is sulfonate or carboxylate.
Claim 7
Dependent Claim 23 words
A reagent according to claim 5, wherein --XYW is substituted at 1-4 of the 1, 8, 15, and 22 positions on the macrocycle.
Claim 8
Dependent Claim 23 words
A reagent according to claim 5, wherein --XYW is substituted at 1-4 of the 2, 9, 16, and 23 positions on the macrocycle.
Claim 9
Dependent Claim 31 words
A reagent according to claim 1, wherein M is aluminum, and at least one R 1 is --XYW, wherein X is O or S, and W is sulfonate or sulfonyl chloride.
Claim 10
Dependent Claim 10 words
A reagent according to claim 8, wherein Y is phenyl.
Claim 11
Dependent Claim 27 words
A reagent according to claim 1, comprising aluminum phthalocyanine 1, 8, 15, 22-tetraglycolic acid, or aluminum phthalocyanine 2, 9, 16, 23-tetraglycolic acid, linked to R 2 .
Claim 12
Dependent Claim 41 words
A reagent according to claim 1, comprising 2, 9, 16, 23 tetraphenoxy aluminum phthalocyanine, 1, 8, 15, 22 tetraphenoxy aluminum phthalocyanine, 2, 9, 16, 22 tetrathiophenyl aluminum phthalocyanine, or 1, 8, 15, 22 tetrathiophenyl aluminum phthalocyanine, linked to R 2 .
Claim 13
Dependent Claim 47 words
A reagent according to claim 1, wherein R 2 is --A or --Y'A, and wherein A is a nucleic acid selected from the group consisting of ATP, CTP, GTP, TTP, UTP, dATP, dCTP, dGTP, dTTP, dUTP, ddATP, ddCTP, ddGTP, ddTTP, ddUTP, and derivatives thereof, oligonucleotides, and polynucleotides.
Claim 14
Dependent Claim 37 words
A kit for sequencing DNA, comprising: a plurality of containers, each containing a different reagent according to claim 1, wherein the different reagents are characterized by having a common excitation wavelength and different wavelengths of maximum emission.
Claim 15
Dependent Claim 24 words
A kit according to claim 13, wherein there are four reagents, and wherein each R 2 group comprises a different nucleotide, deoxynucleotide, or dideoxynucleotide.
Claim 16
Dependent Claim 15 words
A kit according to claim 14, wherein said reagents comprise reagents according to claim 10.
Claim 17
Dependent Claim 15 words
A kit according to claim 14, wherein said reagents comprise reagents according to claim 11.
Claim 18
Dependent Claim 53 words
A kit for sequencing DNA comprising: each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTPT as A labeled with a reagent according to claim 1, a sequencing enzyme, a sequencing primer, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 19
Dependent Claim 42 words
A kit for sequencing DNA comprising: a reagent according to claim 1 wherein A is DNA sequencing primer, a sequencing enzyme, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 20
Dependent Claim 62 words
A kit for sequencing DNA comprising: a plurality of container, each containing a different reagent according to claim 1 attached to a different one of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP as A, a sequencing enzyme, a sequencing primer, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 21
Dependent Claim 50 words
A kit for sequencing DNA comprising: a plurality of containers, each containing a different reagent according to claim 1 attached to a sequencing primer as A, a sequencing enzyme, each of the four deoxynucleotides dATP, dCTP, dGTP, and dTTP, and each of the four dideoxynucleotides ddATP, ddCTP, ddGTP, and ddTTP.
Claim 22
Dependent Claim 174 words
An organometallic reagent useful for magnetic resonance imaging, having the formula: ##STR8## wherein M is a paramagnetic metal or a radioactive metal; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen or --CR, wherein --R is H, alkyl, aryl, or aralkyl.
Claim 23
Dependent Claim 174 words
An organometallic reagent useful for magnetic resonance imaging, having the formula: ##STR8## wherein M is a paramagnetic metal or a radioactive metal; each R 1 is independently --XYW, --O-phenyl, --S-phenyl, --YW, --W, or hydrogen, and wherein at least one R 1 is --XYW, --O-phenyl, or --S-phenyl; X is oxygen, nitrogen, sulfur, phosphorus, silicon, or selenium; or X is CR 3 R 4 , wherein R 3 and R 4 are independently selected from the group consisting of hydrogen, alkyl, aryl, and aralkyl, or R 3 and R 4 together form a carbonyl oxygen; or X is phenyl; Y is a linking group between X and W when R 1 is --XYW, or between W and an aromatic ring of said reagent when R 1 is --YW; W is a water-soluble group; R 2 is --A or --Y'A, wherein --A is a biological entity and Y' is a linking group to --A; or R 2 is a reactive or activatable group; and Z is nitrogen or --CR, wherein --R is H, alkyl, aryl, or aralkyl.
Claim 24
Dependent Claim 20 words
An organometallic reagent according to claim 21, wherein M is selected from the group consisting of gadolinium, manganese, and iron.
Claim 25
Dependent Claim 21 words
A fluorescent reagent according to claim 1, wherein R 2 is --A or --Y'A, and wherein the phthalocyanine macrocycle is monomeric.
Claim 26
Dependent Claim 45 words
A fluorescent reagent according to claim 23 having absorbance in both the red and blue portions of the spectrum, wherein the ratio of the relative heights of the maximum red and blue absorbance peaks of the reagent, A(red)/A(blue), is greater than or equal to 1.4.
Claim 27
Dependent Claim 17 words
A fluorescent reagent according to claim 23, wherein M is aluminum, silicon, gallium, germanium, scandium, or tin.

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