US4828979A
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US
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Nucleotide analogs for nucleic acid labeling and detection
Assignee: Life Technologies Inc
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Filing: 1984-11-08
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Granted: 1989-05-09
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Expires: 2004-11-08
Abstract
Abstract Nucleotide analogs, modified by the attachment at hydrogen bonding positions of linker groups, that is, the 6-position of adenine, 4-position of cytosine, and 2-position of guanine, are prepared. Such analogs, alone or with reporter groups attached, may be incorporated into DNA probes which effectively hybridize to target DNA.
Inventors
- 👤 Leonard Klevan
- 👤 Gulilat Gebeyehu
- 👤 Prasad Y. Rao
Bibliographic Details
Application Number
—
Jurisdiction
US
Data Source
google_patents
Last Synchronized
2026-10-24 22:44
CPC Classifications
C; C07; C07H; C07H21/00; C07H19/00; C07H19/02; C07H19/04; C07H19/16; C07H19/20; C12; C12Q; C12Q1/00; C12Q1/68
Claims Analysis
Total Claims: 16
Claim 1
Independent Claim
181 words
In the processof detecting the presence of a target polynucleotide, said process comprising incorporating a deoxyribonucleotide, modified by the attachment thereto of a biotin, into a polynucleotide complementary to said target polynucleotide; hybridizing said complementary polynucleotide to said target polynucleotide; and detecting the presence of said biotin; the improvement comprising using, for said modified deoxyribonucleotide, compound of the form (d)BTP--NH--L--X, where TP represents triphosphate, and (D)BTP represents dATP, dCTP, dGTP, 3'-deoxy ATP, 3'-doexy CTP, 3'-deoxy GTP, 2',3'-dideoxy ATP, 2',3'-dideoxy CTP or 2',3'-dideoxy GTP; L is bonded through the N of NH to the N 6 position of B when B represents adenosine, to the N 4 position of B when B represents cytidine, and to the N 2 position of B when B represents guanosine; L presents either (CH 2 ) n , where 1≦n≦12, (CH 2 ) n NH--CO-(CH 2 ) m , where 2≦n+m≦24, (CH 2 ) n O--CO--(CH 2 ) m , where 2≦n+m≦24, or (CH 2 ) n S--CO--(CH 2 ) m , where 2≦n+m≦24; and X represents ##STR1## where Y represents either NH, O, or S.
Claim 2
Dependent Claim
181 words
In the processof detecting the presence of a target polynucleotide, said process comprising incorporating a deoxyribonucleotide, modified by the attachment thereto of a biotin, into a polynucleotide complementary to said target polynucleotide; hybridizing said complementary polynucleotide to said target polynucleotide; and detecting the presence of said biotin; the improvement comprising using, for said modified deoxyribonucleotide, compound of the form (d)BTP--NH--L--X, where TP represents triphosphate, and (D)BTP represents dATP, dCTP, dGTP, 3'-deoxy ATP, 3'-doexy CTP, 3'-deoxy GTP, 2',3'-dideoxy ATP, 2',3'-dideoxy CTP or 2',3'-dideoxy GTP; L is bonded through the N of NH to the N 6 position of B when B represents adenosine, to the N 4 position of B when B represents cytidine, and to the N 2 position of B when B represents guanosine; L presents either (CH 2 ) n , where 1≦n≦12, (CH 2 ) n NH--CO-(CH 2 ) m , where 2≦n+m≦24, (CH 2 ) n O--CO--(CH 2 ) m , where 2≦n+m≦24, or (CH 2 ) n S--CO--(CH 2 ) m , where 2≦n+m≦24; and X represents ##STR1## where Y represents either NH, O, or S.
Claim 3
Dependent Claim
14 words
The improved process of claim 1 and in which (d)BTP represents dATP or dCTP.
Claim 4
Dependent Claim
12 words
The improved process of claim 1 and in which (d)BTP represents dGTP.
Claim 5
Dependent Claim
39 words
The improved process of claim 1 and in which L represents either (CH 2 ) n for an n such that 1≦n≦12, or (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24.
Claim 6
Dependent Claim
161 words
In the process of detecting the presence of a target polynucleotide, said process including incorporating a deoxyribonucleotide into a polynucleotide complementary to said target polynucleotide, and hybridizing said complementary polynucleotide to said target polynucleotide, the improvement comprising, using, for said deoxyribonucleotide, a compound of the form (d)BTP--NH--M, where TP represents triphosphate, and (d)BTP, represents dATP, dCTP, dGTP, 3'-deoxy ATP, 3'-deoxy CTP, 3'-deoxy GTP, 2',3'-dideoxy ATP, 2',3'-deoxy CTP or 2',3'-didexoy GTP; M is bonded through the N of NH to the N 6 position of B when B represents adenosine, to the N 4 position of B when B represents cytidine, and to the N 2 position of B when B represents guanosine; and M represents a compound of the form L-X, where X represents NH 2 , OH or SH, and L represents either (CH 2 ) n for an n such that 1≦n≦12, or (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24.
Claim 7
Dependent Claim
161 words
In the process of detecting the presence of a target polynucleotide, said process including incorporating a deoxyribonucleotide into a polynucleotide complementary to said target polynucleotide, and hybridizing said complementary polynucleotide to said target polynucleotide, the improvement comprising, using, for said deoxyribonucleotide, a compound of the form (d)BTP--NH--M, where TP represents triphosphate, and (d)BTP, represents dATP, dCTP, dGTP, 3'-deoxy ATP, 3'-deoxy CTP, 3'-deoxy GTP, 2',3'-dideoxy ATP, 2',3'-deoxy CTP or 2',3'-didexoy GTP; M is bonded through the N of NH to the N 6 position of B when B represents adenosine, to the N 4 position of B when B represents cytidine, and to the N 2 position of B when B represents guanosine; and M represents a compound of the form L-X, where X represents NH 2 , OH or SH, and L represents either (CH 2 ) n for an n such that 1≦n≦12, or (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24.
Claim 8
Dependent Claim
14 words
The improved process of claim 5 and in which (d)BTP represents dATP or dCTP.
Claim 9
Dependent Claim
12 words
The improved process of claim 5 and in which (d)BTP represents dGTP.
Claim 10
Dependent Claim
14 words
The improved process of claim 5 and in which X represents NH 2 .
Claim 11
Dependent Claim
159 words
A compound having the structure (d)BTP--NH--L--NH--X wherein (a) TP represents triphosphate, and (d)BTP represents either 2'-deoxy BTP, 3'-deoxy BTP, or 2',3'-dideoxy BTP, and B represents adenosine, cytidine or guanosine; (b) when B represents adenosine or guanosine, L is bonded through NH to the N 6 position of adenosine or the N 2 position of guanosine, and L represents either (CH 2 ) n for an n such that 1≦n≦12, (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24, CH 2 CONH(CH 2 ) 5 for 1≦n≦12, or CH 2 CONH(CH 2 ) n NHCO(CH 2 ) 5 for 1≦n≦12; (c) when B represents cytidine, L is bonded through NH to the N 4 position of B and L represents either (CH 2 ) n for an n such that 1≦n≦12 or (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24, and (d) X represents biotin.
Claim 12
Dependent Claim
159 words
A compound having the structure (d)BTP--NH--L--NH--X wherein (a) TP represents triphosphate, and (d)BTP represents either 2'-deoxy BTP, 3'-deoxy BTP, or 2',3'-dideoxy BTP, and B represents adenosine, cytidine or guanosine; (b) when B represents adenosine or guanosine, L is bonded through NH to the N 6 position of adenosine or the N 2 position of guanosine, and L represents either (CH 2 ) n for an n such that 1≦n≦12, (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24, CH 2 CONH(CH 2 ) 5 for 1≦n≦12, or CH 2 CONH(CH 2 ) n NHCO(CH 2 ) 5 for 1≦n≦12; (c) when B represents cytidine, L is bonded through NH to the N 4 position of B and L represents either (CH 2 ) n for an n such that 1≦n≦12 or (CH 2 ) n NHCO(CH 2 ) m for an n and m such that 2≦n+m≦24, and (d) X represents biotin.
Claim 13
Dependent Claim
13 words
The compound of claim 9 and wherein B is either adenosine or cytidine.
Claim 14
Dependent Claim
13 words
The compound of claim 9 and wherein (d)BTP is either dATP or dCTP.
Claim 15
Dependent Claim
117 words
A compound having the structure, ##STR2## wherein (a) TP represents triphosphate, and (d)R represents 2'-deoxyribose, 3'-deoxyribose or 2', 3'-dideoxyribose; and either (b) B represents either adenine or cytosine and L represents either (CH 2 ) n where 1≦n≦12, or (CH 2 ) n NHCO(CH 2 ) m , where 2≦n+m≦24, or (c) B represents adeine and L represents either CH 2 CONH(CH 2 ) n for 1≦n≦12 or CH 2 CONH(CH 2 ) n NHCO(CH 2 ) 5 for 1≦n≦12; and wherein, when B represents adenine, L is covalently bonded through NH to the N 6 psition of B, and when B represents cytosine, L is covalently bonded through NH to the N 4 position of B.
Claim 16
Dependent Claim
117 words
A compound having the structure, ##STR2## wherein (a) TP represents triphosphate, and (d)R represents 2'-deoxyribose, 3'-deoxyribose or 2', 3'-dideoxyribose; and either (b) B represents either adenine or cytosine and L represents either (CH 2 ) n where 1≦n≦12, or (CH 2 ) n NHCO(CH 2 ) m , where 2≦n+m≦24, or (c) B represents adeine and L represents either CH 2 CONH(CH 2 ) n for 1≦n≦12 or CH 2 CONH(CH 2 ) n NHCO(CH 2 ) 5 for 1≦n≦12; and wherein, when B represents adenine, L is covalently bonded through NH to the N 6 psition of B, and when B represents cytosine, L is covalently bonded through NH to the N 4 position of B.
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USPTO Annuity & Maintenance Windows
| Annuity Stage | Window Opens | Payment Deadline | Surcharge Period Until | Estimated Fee | Status |
|---|---|---|---|---|---|
| 3.5 Years (Year 4) | 1992-05-08 | 1992-11-07 | 1993-05-09 | $2000.00 | Window Closed / Lapsed |
| 7.5 Years (Year 8) | 1996-05-08 | 1996-11-07 | 1997-05-09 | $3760.00 | Window Closed / Lapsed |
| 11.5 Years (Year 12) | 2000-05-08 | 2000-11-07 | 2001-05-09 | $7700.00 | Window Closed / Lapsed |