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US5677437A Expired / Lapsed US ⏱️ 0.0 years remaining

Heteroatomic oligonucleoside linkages

Assignee: Ionis Pharmaceuticals Inc
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Filing: 1995-02-23
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Granted: 1997-10-14
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Expires: 2015-02-23
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Abstract

Abstract Oligonucleotide-mimicking macromolecules that have improved nuclease resistance are provided. Replacement of the normal phosphorodiester inter-sugar linkages found in natural oligonucleotides with four atom linking groups provide unique compounds that are useful in regulating RNA expression and in therapeutics. Methods of synthesis and use also are disclosed.

Inventors

  • 👤 Kelly Teng
  • 👤 Yogesh S. Sanghvi
  • 👤 Phillip Dan Cook

Bibliographic Details

Application Number —
Jurisdiction US
Data Source google_patents
Last Synchronized 2026-10-30 00:22
CPC Classifications
A; A61; A61K; A61K31/00; A61K31/70; A61K47/00; A61K47/50; A61K47/51; A61K47/56; A61K47/59; C; C07; C07D; C07D405/00; C07D405/02; C07D405/04; C07D405/14; C07F; C07F7/00; C07F7/02; C07F7/08; C07F7/18; C07F7/1804; C07H; C07H19/00; C07H19/02; C07H19/04; C07H19/06; C07H19/10; C07H19/16; C07H21/00

Claims Analysis

Total Claims: 30
Claim 1
Independent Claim 463 words
A compound having structure: ##STR7## wherein: L 1 --L 2 --L 3 --L 4 is CR 1a R 1b --CR 2a R 2b --CR 3a R 3b --Z 4 , CR 1a R 1a --CR 2a R 2b --Z 3 --Z 4 , CR 1a R 1b --Z 2 --CR 3a R 3b --Z 4 , Z 1 --CR 2a R 2b --CR 3a R 3b --Z 4 , CR 1a R 1b --Z 2 --Z 3 --Z 4 , Z 1 --CR 2a R 2b --Z 3 --Z 4 or Z 1 --Z 2 --CR 3a R 3b --Z 4 ; Z 1 , Z 2 , Z 3 and Z 4 are, independently, O, NR 4 , S, SO, SO 2 , Se, P(═Y 1 )Y 2 or Si(R 6 ) 2 ; R 1a , R 1b , R 2a , R 2b , R 3a and R 3b are, independently, H, R 5 , O--R 5 , S--R 5 , NR 4 R 5 ; or, independently, together R 1a and R 1b , or R 2a and R 2b , or R 3a and R 3b are ═O; X is H, OH, O--R 5 , S--R 5 , NR 4 --R 5 , R 5 , F, Cl, Br, CN, CF 3 , OCF 3 , OCN, SOCH 3 , SO 2 CH 3 , ONO 2 , NO 2 , N 3 , aminoalkylamino, polyalkylamino or substituted silyl; Y 1 is O, S, Se, or NR 4 ; Y 2 is OH, OR 5 , SH, SR 5 , SeH, R 5 , BH 3 or NR 4 R 5 ; R 4 , R 5 and R 6 are, independently, one of: an electron pair of a multiple bond; H; straight or branched chain alkyl or substituted alkyl; straight or branched chain alkenyl or substituted alkenyl; straight or branched chain alkynyl or substituted alkynyl; 14 C-containing lower alkyl, lower alkenyl or lower alkynyl; substituted or unsubstituted alkaryl or aralkyl; 14 C-containing alkaryl or aralkyl; aryl; alicyclic; a reporter molecule; and where said substituents are OH, ═O, CO 2 H, O-alkyl, SH, S-alkyl, NH-alkyl, N-(alkyl) 2 , alkyl, F, Cl, Br, CN, CF 3 , OCF 3 , OCN, SOCH 3 , SO 2 CH 3 , ONO 2 , NO 2 , N 3 , NH 2 , aryl, aralkyl, sulfide, or silyl; Q is O or CH 2 ; n is an integer greater than 0; Bx is a variable heterocyclic base moiety; and said alkyl groups have 1 to 12 carbon atoms, said alkenyl and alkynyl groups have 2 to 12 carbon atoms, said alkaryl and aralkyl groups have 7 to 14 carbon atoms, and said aryl groups have 6 to 14 carbon atoms.
Claim 2
Dependent Claim 463 words
A compound having structure: ##STR7## wherein: L 1 --L 2 --L 3 --L 4 is CR 1a R 1b --CR 2a R 2b --CR 3a R 3b --Z 4 , CR 1a R 1a --CR 2a R 2b --Z 3 --Z 4 , CR 1a R 1b --Z 2 --CR 3a R 3b --Z 4 , Z 1 --CR 2a R 2b --CR 3a R 3b --Z 4 , CR 1a R 1b --Z 2 --Z 3 --Z 4 , Z 1 --CR 2a R 2b --Z 3 --Z 4 or Z 1 --Z 2 --CR 3a R 3b --Z 4 ; Z 1 , Z 2 , Z 3 and Z 4 are, independently, O, NR 4 , S, SO, SO 2 , Se, P(═Y 1 )Y 2 or Si(R 6 ) 2 ; R 1a , R 1b , R 2a , R 2b , R 3a and R 3b are, independently, H, R 5 , O--R 5 , S--R 5 , NR 4 R 5 ; or, independently, together R 1a and R 1b , or R 2a and R 2b , or R 3a and R 3b are ═O; X is H, OH, O--R 5 , S--R 5 , NR 4 --R 5 , R 5 , F, Cl, Br, CN, CF 3 , OCF 3 , OCN, SOCH 3 , SO 2 CH 3 , ONO 2 , NO 2 , N 3 , aminoalkylamino, polyalkylamino or substituted silyl; Y 1 is O, S, Se, or NR 4 ; Y 2 is OH, OR 5 , SH, SR 5 , SeH, R 5 , BH 3 or NR 4 R 5 ; R 4 , R 5 and R 6 are, independently, one of: an electron pair of a multiple bond; H; straight or branched chain alkyl or substituted alkyl; straight or branched chain alkenyl or substituted alkenyl; straight or branched chain alkynyl or substituted alkynyl; 14 C-containing lower alkyl, lower alkenyl or lower alkynyl; substituted or unsubstituted alkaryl or aralkyl; 14 C-containing alkaryl or aralkyl; aryl; alicyclic; a reporter molecule; and where said substituents are OH, ═O, CO 2 H, O-alkyl, SH, S-alkyl, NH-alkyl, N-(alkyl) 2 , alkyl, F, Cl, Br, CN, CF 3 , OCF 3 , OCN, SOCH 3 , SO 2 CH 3 , ONO 2 , NO 2 , N 3 , NH 2 , aryl, aralkyl, sulfide, or silyl; Q is O or CH 2 ; n is an integer greater than 0; Bx is a variable heterocyclic base moiety; and said alkyl groups have 1 to 12 carbon atoms, said alkenyl and alkynyl groups have 2 to 12 carbon atoms, said alkaryl and aralkyl groups have 7 to 14 carbon atoms, and said aryl groups have 6 to 14 carbon atoms.
Claim 3
Dependent Claim 30 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is CR 1a R 1b --CR 2a R 2b --CR 3a R 3b --Z 4 .
Claim 4
Dependent Claim 28 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is CR 1a R 1a --CR 2a R 2b --Z 3 --Z 4 .
Claim 5
Dependent Claim 28 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is CR 1a R 1b --Z 2 --CR 3a R 3b --Z 4 .
Claim 6
Dependent Claim 28 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is Z 1 --CR 2a R 2b --CR 3a R 3b --Z 4 .
Claim 7
Dependent Claim 26 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is CR 1a R 1b --Z 2 --Z 3 --Z 4 .
Claim 8
Dependent Claim 26 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is Z 1 --Z 2 --CR 3a R 3b --Z 4 .
Claim 9
Dependent Claim 26 words
The compound of claim 1 wherein L 1 --L 2 --L 3 --L 4 is Z 1 --CR 2a R 2b --Z 3 --Z 4 .
Claim 10
Dependent Claim 9 words
The compound of claim 1 wherein Q is O.
Claim 11
Dependent Claim 11 words
The compound of claim 1 wherein X is H or OH.
Claim 12
Dependent Claim 18 words
The compound of claim 1 R 4 is H or straight or branched chain alkyl or substituted alkyl.
Claim 13
Dependent Claim 15 words
The compound of claim 2 wherein Z 4 is O, S or NR 4 .
Claim 14
Dependent Claim 19 words
The compound of claim 3 wherein Z 3 and Z 4 are, independently, O, S or NR 4 .
Claim 15
Dependent Claim 19 words
The compound of claim 5 wherein Z 1 and Z 4 are, independently, O, S or NR 4 .
Claim 16
Dependent Claim 27 words
The compound of claim 14 wherein Z 1 and Z 4 are O; and R 2a , R 2b , R 3a and R 3b are H.
Claim 17
Dependent Claim 19 words
The compound of claim 4 wherein Z 2 and Z 4 are, independently, O, S or NR 4 .
Claim 18
Dependent Claim 22 words
The compound of claim 6 wherein Z 2 , Z 3 and Z 4 are, independently, O, S or NR 4 .
Claim 19
Dependent Claim 22 words
The compound of claim 7 wherein Z 1 , Z 2 and Z 4 are, independently, O, S or NR 4 .
Claim 20
Dependent Claim 22 words
The compound of claim 8 wherein Z 1 , Z 3 and Z 4 are, independently, O, S or NR 4 .
Claim 21
Dependent Claim 25 words
The compound of claim 1 wherein Z 1 , Z 2 , Z 3 and Z 4 are, independently, O, S or NR 4 .
Claim 22
Dependent Claim 51 words
The compound of claim 1 wherein Z 4 is O, S or NR 4 ; one of Z 1 , Z 2 or Z 3 is P(═Y 1 )Y 2 and the others of Z 1 , Z 2 or Z 3 are O, S, NR 4 or CH 2 .
Claim 23
Dependent Claim 22 words
The compound of claim 21 wherein Z 1 is O, S, NR 4 or CH 2 ; and Z 4 is O.
Claim 24
Dependent Claim 13 words
The compound of claim 22 wherein Z, is O or CH 2 .
Claim 25
Dependent Claim 43 words
The compound of claim 1 wherein R 5 is straight or branched chain lower alkyl or substituted lower alkyl; straight or branched chain lower alkenyl or substituted lower alkenyl; straight or branched chain lower alkynyl or substituted lower alkynyl; or alkaryl or aralkyl.
Claim 26
Dependent Claim 25 words
The compound of claim 1 wherein R 4 and R 5 are, independently, H or straight or branched chain lower alkyl or substituted lower alkyl.
Claim 27
Dependent Claim 33 words
The compound of claim 1 wherein R 4 and R 5 are an electron pair such that one of L 1 --L 2 or L 2 --L 3 together is an alkene moiety.
Claim 28
Dependent Claim 10 words
The compound of claim 1 wherein Z 4 is O.
Claim 29
Dependent Claim 23 words
The compound of claim 27 wherein one of Z 2 or Z 3 is SO, SO 2 or Si(R 6 ) 2 .
Claim 30
Dependent Claim 18 words
The compound of claim 1 wherein R 6 is straight or branched chain lower alkyl, aralkyl or aryl.

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Annuity Stage Window Opens Payment Deadline Surcharge Period Until Estimated Fee Status
3.5 Years (Year 4) 2000-10-13 2001-04-14 2001-10-14 $2000.00 Window Closed / Lapsed
7.5 Years (Year 8) 2004-10-13 2005-04-14 2005-10-14 $3760.00 Window Closed / Lapsed
11.5 Years (Year 12) 2008-10-13 2009-04-14 2009-10-14 $7700.00 Window Closed / Lapsed

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