Process for the preparation of oligonucleotides

Claim 1

A process for the preparation of oligonucleotides of the general formula I in which B denotes a nucleoside base, R 1 denotes hydrogen, hydroxyl or hydroxyl which is protected by a removable protective group and n denotes an integer from 1 to 200, comprising the steps of (a) reacting a nucleoside of the general formula II ##STR14## in which R 1 as defined as above, and R 2 denotes a removable protective group and B' denotes the nucleoside base B protected by the protective groups which can be eliminated, with a phosphine derivative of the general formula III ##STR15## in which R 3 is a protective group which can be eliminated, and X and L are groups which react with hydroxyl groups in the sugar moieties of the nucleotides or nucleosides, in the presence of a base to thereby form a nucleotide phosphite (b) reacting the nucleotide phosphite obtained in step (a) and represented by the formula IV: ##STR16## in which B', R 1 , R 2 , R 3 and L are as defined above, with a nucleoside, of the general formula V, bound to a polymeric carrier ##STR17## in which B' and R 1 are as defined above and C denotes the polymeric carrier; (c) oxidizing the carrier-bound nucleoside-nucleotides obtained in step (b) and represented by the formula: ##STR18## in which B', R 1 , R 2 , R 3 and C are as defined above, with formation of phosphotriester groups, (d) blocking free primary 5'-OH groups, which have not been reacted in the reaction according to step (b), with permanent protective groups; (e) eliminating the protective group R 2 ; (f) optionally repeating steps (a) to (e) to introduce further nucleoside phosphate or oligonucleoside phosphate units; and (g) cleaving the nucleoside carrier bond and optionally eliminating the protective groups present in the oligonucleoside phosphates, which process comprises using in step (a) as the phosphine derivative of the general formula III a compound in which R 3 denotes a group of the formula VII ##STR19## in which the groups Y, which can be identical or different, represent hydrogen, methyl, and/or ethyl and Z represents an electron-attracting group, where, in the phosphine derivative of the formula III, X is chlorine, bromine, CN or SCN and L is CN or SCN, a secondary amino radical of the formula (VIII) --NR.sub.2.sup.4 where the groups R 4 are primary, secondary, or tertiary alkyl radicals having 1-10 carbon atoms, or together form a cycloalkyl radical having 5-7 carbon atoms, which can contain one or two nitrogen, oxygen, or sulfur atoms as hereoatoms, or are imidazole, triazole, tetrazole, 3-nitro-1,2,4-triazole, thiazole, pyrrole, benzotriazole, benzohydroxytriazole, imidazole substituted in the phenyl moiety, triazole substituted in the phenyl moiety, tetrazole substituted in the phenyl moiety, 3-nitro-1,2,4-triazole substituted in the phenyl moiety, thiazole substituted in the phenyl moiety, pyrrole substituted in the phenyl moiety, benzotriazole substituted in the phenyl moiety, or benzohydroxytrizole substituted in the phenyl moiety.

Claim 5

A method of preparing oligonucleotides of the general formula: ##STR20## wherein B is a nucleoside base, R 1 is hydrogen, hydroxyl or hydroxyl which is protected by removable nucleoside protective groups, and n denotes an integer from 1 to 200, comprising the steps of: (a) reacting a nucleotide phosphite represented by the formula: ##STR21## wherein B' is a nucleoside base B protected by a base protective group which can be eliminated, R 1 is as defined above, R 2 is 4,4' dimethoxytrityl or 4,4',4" trimethoxytrityl; and L is N,N-dimethylamino, N,N-diethylamino, N,N-diisopropylamino, or N-morpholino, with a nucleoside bound to a polymeric carrier, of the general formula: ##STR22## wherein B' and R 1 are as defined above and C represents the polymeric carrier, to produce a carrier bound nucleoside-nucleotide of the formula: ##STR23## wherein B', R 1 , R 2 , R 3 and C are as defined above; (b) oxidizing the carrier bound nucleoside-nucleotide; (c) blocking free primary 5'-OH groups, which have not been reacted in the reaction of step (a), with permanent protective groups; (d) eliminating the protecting group R 2 ; (f) repeating steps (a) to (d) to introduce further nucleoside phosphate units; and (g) cleaving the nucleoside-carrier bond and optionally eliminating protective groups present in the oligonucleoside phosphates.

Claim 6

A method of preparing oligonucleotides of the general formula: ##STR20## wherein B is a nucleoside base, R 1 is hydrogen, hydroxyl or hydroxyl which is protected by removable nucleoside protective groups, and n denotes an integer from 1 to 200, comprising the steps of: (a) reacting a nucleotide phosphite represented by the formula: ##STR21## wherein B' is a nucleoside base B protected by a base protective group which can be eliminated, R 1 is as defined above, R 2 is 4,4' dimethoxytrityl or 4,4',4" trimethoxytrityl; and L is N,N-dimethylamino, N,N-diethylamino, N,N-diisopropylamino, or N-morpholino, with a nucleoside bound to a polymeric carrier, of the general formula: ##STR22## wherein B' and R 1 are as defined above and C represents the polymeric carrier, to produce a carrier bound nucleoside-nucleotide of the formula: ##STR23## wherein B', R 1 , R 2 , R 3 and C are as defined above; (b) oxidizing the carrier bound nucleoside-nucleotide; (c) blocking free primary 5'-OH groups, which have not been reacted in the reaction of step (a), with permanent protective groups; (d) eliminating the protecting group R 2 ; (f) repeating steps (a) to (d) to introduce further nucleoside phosphate units; and (g) cleaving the nucleoside-carrier bond and optionally eliminating protective groups present in the oligonucleoside phosphates.

Claim 7

A method of synthesizing oligonucleotides, comprising the steps of: (a) coupling a nucleoside β-cyanoethyl-protected phosphoramidite to a carrier-bound nucleoside to produce a carrier bound nucleoside-nucleotide having a phosphite triester linkage; (b) oxidizing the phosphite triester to form a phosphate triester; (c) optionally coupling additional nucleoside β-cyanoethyl-protected phosphoramidites to the carrier bound nucleoside-nucleotide and, after each coupling step, oxidizing the resulting phosphite triester to form a phosphate triester, to form a carrier bound polynucleotide; (d) removing the β-cyanoethyl protecting groups; and (e) removing the polynucleotide from the carrier.

Claim 8

A method of synthesizing oligonucleotides, comprising the steps of: (a) coupling a nucleoside β-cyanoethyl-protected phosphoramidite to a carrier-bound nucleoside to produce a carrier bound nucleoside-nucleotide having a phosphite triester linkage; (b) oxidizing the phosphite triester to form a phosphate triester; (c) optionally coupling additional nucleoside β-cyanoethyl-protected phosphoramidites to the carrier bound nucleoside-nucleotide and, after each coupling step, oxidizing the resulting phosphite triester to form a phosphate triester, to form a carrier bound polynucleotide; (d) removing the β-cyanoethyl protecting groups; and (e) removing the polynucleotide from the carrier.

Claim 14

A method of synthesizing oligonucleotides, comprising the steps of: a. coupling a nucleoside β-cyanoethyl-protected phosphoramidite to a nucleoside, the nucleoside being bound to a polymeric carrier via an ester bond to produce a carrier-bound nucleoside-nucleotide having a phosphite triester linkage; b. oxidizing the phosphite triester to form a phosphate triester linkage; c. sequentially coupling additional nucleoside β-cyanoethyl protected phosphoramidite to the carrier-bound nucleoside-nucleotide, and after each coupling step, oxidizing the resulting phosphite triester linkage to a phosphate triester to produce a carrier-bound polynucleotide; d. treating the carrier bound polynucleotide with concentrated ammonia to remove the β-cyanoethyl phosphate protecting group and hydrolyzing the ester bond to the carrier to remove the polynucleotide from the carrier.

Claim 15

A method of synthesizing oligonucleotides, comprising the steps of: a. coupling a nucleoside β-cyanoethyl-protected phosphoramidite to a nucleoside, the nucleoside being bound to a polymeric carrier via an ester bond to produce a carrier-bound nucleoside-nucleotide having a phosphite triester linkage; b. oxidizing the phosphite triester to form a phosphate triester linkage; c. sequentially coupling additional nucleoside β-cyanoethyl protected phosphoramidite to the carrier-bound nucleoside-nucleotide, and after each coupling step, oxidizing the resulting phosphite triester linkage to a phosphate triester to produce a carrier-bound polynucleotide; d. treating the carrier bound polynucleotide with concentrated ammonia to remove the β-cyanoethyl phosphate protecting group and hydrolyzing the ester bond to the carrier to remove the polynucleotide from the carrier.