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US6339147B1 Expired / Lapsed US ⏱️ 0.0 years remaining

Attachment of oligonucleotides to solid supports through Schiff base type linkages for capture and detection of nucleic acids

Assignee: Epoch Biosciences Inc
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Filing: 1999-07-29
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Granted: 2002-01-15
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Expires: 2019-07-29
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Abstract

Abstract Derivatized oligonucleotides (ODNs) are coupled to a solid support in improved yield resulting in a high density of coupled oligonucleotide per surface unit of the support, through a Schiff base type bond formed between an NH2 group attached either to the solid support or to the ODN and an aromatic aldehyde attached to the other of the solid support and the ODN. The preferred solid support-ODN conjugate is formed between semicarbazide groups attached to a glass surface and an aromatic aldehyde attached at either 3', or 5' end of an ODN or to an intermediate nucleotide of the ODN.

Inventors

  • 👤 Eugeny Alexander Lukhtanov
  • 👤 Mikhail A. Podyminogin
  • 👤 Joel Hedgpeth

Bibliographic Details

Application Number —
Jurisdiction US
Data Source google_patents
Last Synchronized 2026-10-28 21:39
CPC Classifications
C; C40; C40B; C40B50/00; C40B50/14; C40B50/18; C07; C07F; C07F9/00; C07F9/02; C07F9/06; C07F9/22; C07F9/24; C07F9/2404; C07F9/2408; C07H; C07H21/00; C07B; C07B2200/00; C07B2200/11

Claims Analysis

Total Claims: 22
Claim 1
Independent Claim 310 words
A composition of matter comprising an oligonucleotide attached to a solid support, having the formula selected from the group consisting of formula (i) and formula (ii), where the symbol solid-phase represents a solid matrix to which the rest of the composition is covalently attached; n=1 to 30; m is 1 to 30; R 3 is H, C 1 -C 6 alkyl or C 3 -C 4 cycloalkyl; X is —N═, —UN═, —C═(U)—NH—N═, —NH—C═(U)—NH—N═, —NH—NH—C═(U)—NH—N═ or —U—NH—C═(U)—NH—N═, where U is independently O or S; Q is carbocyclic condensed or not-condensed aromatic ring, or a condensed or not-condensed heteroaromatic ring, said carbocyclic or heteroaromatic ring being optionally substituted with a lower alkyl, lower alkoxy or halogen group; V is a linker having the length of 2 to 100 atoms that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, C═(O)—NH—,—NE—C(═O)—NH—, —NH—C(═S)—NH—, —S—, OP(O − )(O)O— and —S—S—; W is a linker having the length of 2 to 100 atoms that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, —C═(O)—NH—, —NH—C(═O)—NH—, —NH—C(═S)—NH—, —S—, OP(O)(O − )O— and —S—S—, said linker W terminating with a carbon atom adjacent to X; T is a valence bond or a linker having the length of 1 to 100 atoms, that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, —C═(O)—NH—, —NH—C(═O)—NH—, —NH—C(═S)—NH—, —S— and —S—S—, said linker T terminating with a carbon atom adjacent to X, R 5 is —O—P(O)(—U − )—3′-oligomer of nucleotides or —O—P═(O)(—U − )-5′-oligomer of nucleotides where U is O or S.
Claim 2
Dependent Claim 310 words
A composition of matter comprising an oligonucleotide attached to a solid support, having the formula selected from the group consisting of formula (i) and formula (ii), where the symbol solid-phase represents a solid matrix to which the rest of the composition is covalently attached; n=1 to 30; m is 1 to 30; R 3 is H, C 1 -C 6 alkyl or C 3 -C 4 cycloalkyl; X is —N═, —UN═, —C═(U)—NH—N═, —NH—C═(U)—NH—N═, —NH—NH—C═(U)—NH—N═ or —U—NH—C═(U)—NH—N═, where U is independently O or S; Q is carbocyclic condensed or not-condensed aromatic ring, or a condensed or not-condensed heteroaromatic ring, said carbocyclic or heteroaromatic ring being optionally substituted with a lower alkyl, lower alkoxy or halogen group; V is a linker having the length of 2 to 100 atoms that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, C═(O)—NH—,—NE—C(═O)—NH—, —NH—C(═S)—NH—, —S—, OP(O − )(O)O— and —S—S—; W is a linker having the length of 2 to 100 atoms that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, —C═(O)—NH—, —NH—C(═O)—NH—, —NH—C(═S)—NH—, —S—, OP(O)(O − )O— and —S—S—, said linker W terminating with a carbon atom adjacent to X; T is a valence bond or a linker having the length of 1 to 100 atoms, that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —O—, —NH—C(═O)—, —C═(O)—NH—, —NH—C(═O)—NH—, —NH—C(═S)—NH—, —S— and —S—S—, said linker T terminating with a carbon atom adjacent to X, R 5 is —O—P(O)(—U − )—3′-oligomer of nucleotides or —O—P═(O)(—U − )-5′-oligomer of nucleotides where U is O or S.
Claim 3
Dependent Claim 14 words
A composition of matter in accordance with claim 1 in accordance with formula (i).
Claim 4
Dependent Claim 15 words
A composition of matter in accordance with claim 2 where X is —NH—C═(O)—NH—N═ or —C═(O)—NH—N═.
Claim 5
Dependent Claim 13 words
A composition of matter in accordance with claim 3 where X is —NH—C═(O)—NH—N═.
Claim 6
Dependent Claim 15 words
A composition of matter in accordance with claim 2 where Q represents a benzene ring.
Claim 7
Dependent Claim 15 words
A composition of matter in accordance with claim 4 where Q represents a benzene ring.
Claim 8
Dependent Claim 17 words
A composition of matter in accordance with claim 2 where the solid phase is a glass surface.
Claim 9
Dependent Claim 14 words
A composition of matter in accordance with claim 1 in accordance with formula (ii).
Claim 10
Dependent Claim 15 words
A composition of matter in accordance with claim 8 where X is —NH—C═(O)—NH—N═ or —C═(O)—NH—N═.
Claim 11
Dependent Claim 13 words
A composition of matter in accordance with claim 9 where X is —NH—C═(O)—NH—N═.
Claim 12
Dependent Claim 15 words
A composition of matter in accordance with claim 8 where Q represents a benzene ring.
Claim 13
Dependent Claim 17 words
A composition of matter in accordance with claim 8 where the solid phase is a glass surface.
Claim 14
Dependent Claim 28 words
A composition of matter in accordance with claim 2 where NH 2 groups not attached to the oligonucleotide are end-capped with a covalently linked moiety containing an anion.
Claim 15
Dependent Claim 136 words
A composition of matter comprising an oligonucleotide attached to a glass support, having the formula where Glass represents the glass support; R 1 is independently H, alkyl of 1 to 10 carbons, aryl or represents a bond within the glass matrix; n is an integer having the values 1 to 30; R 3 is H or an alkyl group of 1 to 6 carbons; V is a linker having the length of 2 to 100 atoms, that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —OH, —O—, —NH—C(═O)—, —C═(O)—NH—,—NH—C═(O)—NH—, —NH—C(═S)—NH—, —S—, OP(O)(O − )O— and —S—S—, and R 5 is —O—P═(O)(—U − )-3′-oligomer of nucleotides or —O—P═(O)(—U − )-5′-oligomer of nucleotides where U is O or S.
Claim 16
Dependent Claim 136 words
A composition of matter comprising an oligonucleotide attached to a glass support, having the formula where Glass represents the glass support; R 1 is independently H, alkyl of 1 to 10 carbons, aryl or represents a bond within the glass matrix; n is an integer having the values 1 to 30; R 3 is H or an alkyl group of 1 to 6 carbons; V is a linker having the length of 2 to 100 atoms, that contains carbon to carbon bonds and optionally and independently may contain carbon to oxygen bonds and one or more moieties selected from the group consisting of —NH—, —OH, —O—, —NH—C(═O)—, —C═(O)—NH—,—NH—C═(O)—NH—, —NH—C(═S)—NH—, —S—, OP(O)(O − )O— and —S—S—, and R 5 is —O—P═(O)(—U − )-3′-oligomer of nucleotides or —O—P═(O)(—U − )-5′-oligomer of nucleotides where U is O or S.
Claim 17
Dependent Claim 13 words
A composition of matter in accordance with claim 14 where n is 3.
Claim 18
Dependent Claim 14 words
A composition of matter in accordance with claim 14 where R 3 is H.
Claim 19
Dependent Claim 24 words
A composition of matter in accordance with claim 14 where the phenyl group is attached through linker V to the 5′-end of the oligonucleotide.
Claim 20
Dependent Claim 24 words
A composition of matter in accordance with claim 14 where the phenyl group is attached through linker V to the 3′-end of the oligonucleotide.
Claim 21
Dependent Claim 32 words
A composition of matter in accordance with claim 14 where n is 3, R 3 is H, and the phenyl group is attached through linker V to the 5′-end of the oligonucleotide.
Claim 22
Dependent Claim 19 words
A composition of matter in accordance with claim 19 where the linker V includes an OP(O)(O − )O— moiety.

References Cited (Backward Citations)

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USPTO Annuity & Maintenance Windows

Annuity Stage Window Opens Payment Deadline Surcharge Period Until Estimated Fee Status
3.5 Years (Year 4) 2005-01-14 2005-07-16 2006-01-15 $2000.00 Window Closed / Lapsed
7.5 Years (Year 8) 2009-01-14 2009-07-16 2010-01-15 $3760.00 Window Closed / Lapsed
11.5 Years (Year 12) 2013-01-14 2013-07-16 2014-01-15 $7700.00 Window Closed / Lapsed

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