Apparatus and method for polymer synthesis using arrays

Claim 2

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units to a solid support in a liquid reagent comprising: a base assembly including a reaction well, and having at least one orifice extending into said well; at least one solid support disposed in said well for growing and immobilizing a polymer chain thereon; reagent solution in said well in contact with said solid support and at least one polymer unit of said polymer chain affixed to said solid support; retaining means positioned in said well, and formed and dimensioned to substantially prevent passage of said solid support through said orifice; said orifice having an entrance into said well and an exit, and being of a size and dimension to form a capillary liquid seal to retain said reagent solution in said well to enable polymer chain growth therein when a pressure differential between a first gas pressure exerted on said reaction well and a second gas pressure exerted on said orifice exit is less than a predetermined amount; and a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said reagent solution being expelled from said well through said orifice.

Claim 3

The polymer synthesis apparatus as defined in claim 1 wherein, said retaining means comprises a filter member disposed in said well between said one orifice and said support structure.

Claim 4

The polymer synthesis apparatus as defined in claim 2 wherein, said filter member is composed of a glass fiber frit.

Claim 5

The polymer synthesis apparatus as defined in claim 2 wherein, said filter member and said orifice cooperate in a manner forming said capillary liquid seal.

Claim 6

The polymer synthesis apparatus as defined in claim 1 further including: a top chamber mechanism cooperating with a top surface of said base assembly to form a top chamber enclosing said reaction well therein, said regulating device communicating with said top chamber to regulate said pressure differential.

Claim 7

The polymer synthesis apparatus as defined in claim 1 wherein, said solid support is provided by controlled pore glass (CPG).

Claim 8

The polymer synthesis apparatus as defined in claim 1 wherein, said polymer chain is an oligonucleotide.

Claim 9

The polymer synthesis apparatus as defined in claim 1 further including: a bottom chamber mechanism cooperating with a bottom surface of said base assembly to form a bottom chamber enclosing said orifice therein, said regulating device communicating with said bottom chamber to regulate said pressure differential.

Claim 10

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a liquid reagent, said apparatus comprising: a frame assembly; a base assembly movably mounted to said frame assembly and including an array of reaction wells aligned in a plurality of spaced-apart well rows and columns, each well having at least one respective orifice extending into said well; a head assembly mounted to said frame assembly and having an array of nozzles aligned in a plurality of nozzle rows and columns spaced-apart by a distance substantially similar to the spacing between said well rows and columns for alignment therebetween, each nozzle being coupled to a reservoir of liquid reagent for controlled delivery therethrough; a transport mechanism coupled to said base assembly for moving support, relative said head assembly, along a path substantially parallel to said nozzle columns to position at least one row of reaction wells in depository alignment with a selected row of nozzles for simultaneous deposition of a liquid reagent into selected reaction wells for synthesis of polymer chains; a sliding seal positioned between said head assembly and said base assembly, and enclosing all said reaction wells and all said nozzles therein to form a common chamber; each said well orifice being of a size and dimension to form a capillary liquid seal to retain said deposited liquid reagent in said selected wells to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted each orifice exit is less than a predetermined amount; and a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said liquid reagent being expelled from respective wells through respective orifices.

Claim 11

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a liquid reagent, said apparatus comprising: a frame assembly; a base assembly movably mounted to said frame assembly and including an array of reaction wells aligned in a plurality of spaced-apart well rows and columns, each well having at least one respective orifice extending into said well; a head assembly mounted to said frame assembly and having an array of nozzles aligned in a plurality of nozzle rows and columns spaced-apart by a distance substantially similar to the spacing between said well rows and columns for alignment therebetween, each nozzle being coupled to a reservoir of liquid reagent for controlled delivery therethrough; a transport mechanism coupled to said base assembly for moving support, relative said head assembly, along a path substantially parallel to said nozzle columns to position at least one row of reaction wells in depository alignment with a selected row of nozzles for simultaneous deposition of a liquid reagent into selected reaction wells for synthesis of polymer chains; a sliding seal positioned between said head assembly and said base assembly, and enclosing all said reaction wells and all said nozzles therein to form a common chamber; each said well orifice being of a size and dimension to form a capillary liquid seal to retain said deposited liquid reagent in said selected wells to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted each orifice exit is less than a predetermined amount; and a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said liquid reagent being expelled from respective wells through respective orifices.

Claim 12

The polymer synthesis apparatus as defined in claim 9 wherein, said sliding seal is provided by a balloon seal having one end affixed to a bottom surface of said head assembly, and an opposite end in sliding contact with a top surface of said base assembly.

Claim 13

The polymer synthesis apparatus as defined in claim 10 wherein, said transport mechanism includes a stepped motor operably coupled to said base assembly for linear incremental movement of said reactions wells along said path.

Claim 14

The polymer synthesis apparatus as defined in claim 11 wherein, respective nozzles of each nozzle row are coupled to one reagent reservoir of said plurality of independent reagent reservoirs.

Claim 15

The polymer synthesis apparatus as defined in claim 12 wherein, each nozzle communicates with said respective reagent reservoir through a tube forming a passageway and having one end coupled to said nozzle and an opposite end terminating in said reagent reservoir, and each tube includes a valve assembly in-line with said respective passageway to control passage of the reagent solution therethrough.

Claim 16

The polymer synthesis apparatus as defined in claim 13 wherein, said pressure regulating device includes an inlet into said common chamber positioned upstream from said array of nozzles, an outlet out of said common chamber positioned downstream from said array of nozzles, and a pressurized gas source coupled to said inlet for continuously streaming a gas from said gas source through said common chamber from said chamber upstream to said chamber downstream and out said outlet to sweep said chamber of toxic fumes emitted by said reagents.

Claim 17

The polymer synthesis apparatus as defined in claim 14 wherein, said regulating device further includes a chamber valve coupled to said outlet controlling outflow of said gas from said chamber for one of raising said pressure differential above said predetermined amount and lowering said pressure differential below said predetermined amount.

Claim 18

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a reagent solution, said apparatus comprising: a head assembly having a plurality of nozzles mounted thereto in generally spaced-apart relation, each nozzle being coupled to a reservoir of liquid reagent for controlled delivery therethrough; a base assembly having at least one reaction well, and at least one orifice extending into said well; a transport mechanism coupled to at least one of said head assembly and said base assembly to produce relative movement therebetween to position said reaction well and a selected one nozzle in alignment for deposition of a liquid reagent into said reaction well for synthesis of a polymer chain; said orifice having an entrance into said well and an exit, and being of a size and dimension to form a capillary liquid seal to retain said deposited liquid reagent in said well to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted on said orifice exit is less than a predetermined amount; a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said reagent solution being expelled from said well through said orifice; and a sliding seal positioned between said head assembly and said base assembly forms a common chamber enclosing both said reaction well and said nozzles therein.

Claim 19

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a reagent solution, said apparatus comprising: a head assembly having a plurality of nozzles mounted thereto in generally spaced-apart relation, each nozzle being coupled to a reservoir of liquid reagent for controlled delivery therethrough; a base assembly having at least one reaction well, and at least one orifice extending into said well; a transport mechanism coupled to at least one of said head assembly and said base assembly to produce relative movement therebetween to position said reaction well and a selected one nozzle in alignment for deposition of a liquid reagent into said reaction well for synthesis of a polymer chain; said orifice having an entrance into said well and an exit, and being of a size and dimension to form a capillary liquid seal to retain said deposited liquid reagent in said well to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted on said orifice exit is less than a predetermined amount; a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said reagent solution being expelled from said well through said orifice; and a sliding seal positioned between said head assembly and said base assembly forms a common chamber enclosing both said reaction well and said nozzles therein.

Claim 20

The polymer synthesis apparatus as defined in claim 16 further including: at least one solid support disposed in said well for growing and immobilizing said polymer chain thereon; said liquid reagent deposited in said well in contact with said solid support and at least one polymer unit of said polymer chain affixed to said solid support; and retaining means positioned in said well, and formed and dimensioned to substantially prevent passage of solid support through said orifice.

Claim 21

The polymer synthesis apparatus as defined in claim 16 wherein, said pressure regulating device includes an inlet into said common chamber positioned upstream from said nozzles, an outlet out of said common chamber positioned downstream from said nozzles, and a pressurized gas source coupled to said inlet for continuously streaming a gas from said gas source through said common chamber from said chamber upstream to said chamber downstream and out said outlet to sweep said chamber of toxic fumes emitted by said reagents.

Claim 22

The polymer synthesis apparatus as defined in claim 18 wherein, said regulating device further includes a chamber valve coupled to said outlet controlling outflow of said gas from said chamber for one of raising said pressure differential above said predetermined amount and lowering said pressure differential below said predetermined amount.

Claim 23

The polymer synthesis apparatus as defined in claim 18 wherein, said inlet and said outlet are defined by said head assembly.

Claim 24

The polymer synthesis apparatus as defined in claim 16 wherein, said base assembly includes a top surface defining said well, and a opposite facing bottom surface, said orifice extending from said bottom surface to said top surface and into said well, and said synthesis apparatus further including: a bottom chamber mechanism cooperating with said base bottom surface to form a bottom chamber enclosing said orifice therein, said regulating device communicating with said bottom chamber to form a vacuum for regulation of said pressure differential.

Claim 25

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a reagent solution, said apparatus comprising: a base assembly defining a plurality of wells aligned in an array spaced-apart rows and columns; a head assembly having a plurality of nozzles aligned in an array having nozzle rows and columns spaced-apart by a distance substantially similar to the spacing between said spaced-apart well rows and columns for simultaneous alignment therebetween, each nozzle being coupled to one reservoir of a plurality of independent reagent reservoirs each including a different liquid reagent for selective, sequential and controlled delivery in said well in a predetermined manner through a respective nozzle; a transport mechanism coupled to at least one of said head assembly and said base assembly to produce relative movement therebetween to align any one selected nozzle with any one well for deposition of a liquid reagent into said one reaction well for synthesis of a polymer chain; each reaction well including at least one respective orifice extending into a respective well, each orifice having an entrance into said well and an exit, and being of a size and dimension to form a capillary liquid seal to retain the deposited liquid reagent in selected wells to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted each orifice exit is less than a predetermined amount; and a sliding seal positioned between said head assembly and said base assembly to form a common chamber enclosing both said reaction well and said nozzles therein.

Claim 26

A polymer synthesis apparatus for building a polymer chain by sequentially adding polymer units in a reagent solution, said apparatus comprising: a base assembly defining a plurality of wells aligned in an array spaced-apart rows and columns; a head assembly having a plurality of nozzles aligned in an array having nozzle rows and columns spaced-apart by a distance substantially similar to the spacing between said spaced-apart well rows and columns for simultaneous alignment therebetween, each nozzle being coupled to one reservoir of a plurality of independent reagent reservoirs each including a different liquid reagent for selective, sequential and controlled delivery in said well in a predetermined manner through a respective nozzle; a transport mechanism coupled to at least one of said head assembly and said base assembly to produce relative movement therebetween to align any one selected nozzle with any one well for deposition of a liquid reagent into said one reaction well for synthesis of a polymer chain; each reaction well including at least one respective orifice extending into a respective well, each orifice having an entrance into said well and an exit, and being of a size and dimension to form a capillary liquid seal to retain the deposited liquid reagent in selected wells to enable polymer chain growth therein when a pressure differential between a first gas pressure in said chamber and a second gas pressure exerted each orifice exit is less than a predetermined amount; and a sliding seal positioned between said head assembly and said base assembly to form a common chamber enclosing both said reaction well and said nozzles therein.

Claim 27

The polymer synthesis apparatus as defined in claim 22 further including: a pressure regulating device for controlling said pressure differential such that upon said pressure differential exceeding said predetermined amount, said reagent solution being expelled from said well through said orifice.

Claim 28

The polymer synthesis apparatus as defined in claim 23 wherein, said pressure regulating device includes an inlet into said common chamber positioned upstream from said array of nozzles, an outlet out of said common chamber positioned downstream from said array of nozzles, and a pressurized gas source coupled to said inlet for continuously streaming a gas from said gas source through said common chamber from said chamber upstream to said chamber downstream and out said outlet to sweep said chamber of toxic fumes emitted by said reagents.

Claim 29

The polymer synthesis apparatus as defined in claim 24 wherein, said regulating device further includes a chamber valve coupled to said outlet controlling outflow of said gas from said chamber for one of raising said pressure differential above said predetermined amount and lowering said pressure differential below said predetermined amount.

Claim 30

The polymer synthesis apparatus as defined in claim 25 wherein, said inlet and said outlet are defined by said head assembly.

Claim 31

The polymer synthesis apparatus as defined in claim 26 wherein, said inlet is provided by an inlet slot extending substantially transversely across said common chamber such that said continuous stream is substantially laminar during passage by said array of nozzles.

Claim 32

The polymer synthesis apparatus as defined in claim 27 wherein, said outlet is provided by an outlet slot extending substantially transversely across said common chamber.