Quadruple ion trap method having improved sensitivity

Claim 2

In a method for selectively trapping and isolating a selected ion or range of ions in a quadrupole ion trap (QIT) system, said QIT system having a ring electrode, a pair of end caps, an RF trapping voltage source having a trapping frequency F, a first supplemental RF waveform connected to said end caps, and a second supplementary RF waveform connected to said end caps, and means for introducing a sample into said QIT, said method for isolating including the steps of: a. establishing said RF trapping voltage at a first value to enable retention of a large mass range of ions in said ion trap, said value sufficiently low to correspond to the best trapping efficiency; b. forming ions or injecting ions of a sample in said QIT; c. applying said first supplementary RF waveform to said end caps to resonantly reject selected ions; d. resetting said RF trapping voltage to a second value, said second value corresponding to a value of q z of at least 0.7 wherein q z is proportional to said RF trapping voltage and inversely proportional to the mass of said ions; e. applying said second supplementary RF waveform to said end caps to resonantly reject selected ions; f. simultaneously carrying out steps (b) and (c), wherein the waveform of said first supplementary RF waveform is a composite of the secular frequencies corresponding to the ions from the constituents of the residual gases in said QIT, obtaining said composite by adding together at selected points in time, the amplitude of each said secular frequency waveform.

Claim 3

The method of claim 1 wherein said residual gases also include air gases which are in said QIT during the ionization step which will become ionized, the ions of which are retained in said trap in large enough numbers to increase the space charge in said QIT so as to inhibit efficient collection of the heavier ions in said trap.

Claim 4

In a method for selectively trapping and isolating a selected ion or range of ions employing a quadrupole ion trap (QIT) system, said QIT system having a ring electrode, a pair of end caps, an RF trapping voltage source having trapping frequency F, a first supplementary RF waveform connected to said end caps, and a second supplementary RF waveform connected to said end caps, said method for selective trapping and isolating ions including: a. establishing said RF trapping voltage at a first value to enable retention of a mass range of ions in said ion trap, said value sufficiently low to correspond to the best trapping efficiency; b. providing ions of a sample in said QIT; c. applying said first supplementary RF waveform to said end caps to resonantly reject selected undesired ions, wherein said RF waveform contains a plurality of frequencies; d. resetting said RF trapping voltage to a second value, said second value corresponding to a value of q z of at least 0.7 wherein q z is proportional to said RF trapping voltage and inversely proportional to the mass of said ions; e. applying a fixed frequency with the second supplementary waveform, f. simultaneously carrying out steps (b) and (c) and then simultaneously carrying out steps (d) and (e) wherein the waveform of said first supplementary waveform in step (b) and (c) is a composite of the secular frequencies corresponding to the m/z for the ions which are to be ejected during the trapping, obtaining said composite by adding together, at selected points in time, the instantaneous voltage of each said secular frequency for each said ion, wherein the amplitudes A i and A n of the said secular frequencies for first ions of mass m i and charge z i are related to ions of mass m n and charge z n such that ##EQU5## where 0.5≦x≦1.5.

Claim 5

In a method for selectively trapping and isolating a selected ion or range of ions employing a quadrupole ion trap (QIT) system, said QIT system having a ring electrode, a pair of end caps, an RF trapping voltage source having trapping frequency F, a first supplementary RF waveform connected to said end caps, and a second supplementary RF waveform connected to said end caps, said method for selective trapping and isolating ions including: a. establishing said RF trapping voltage at a first value to enable retention of a mass range of ions in said ion trap, said value sufficiently low to correspond to the best trapping efficiency; b. providing ions of a sample in said QIT; c. applying said first supplementary RF waveform to said end caps to resonantly reject selected undesired ions, wherein said RF waveform contains a plurality of frequencies; d. resetting said RF trapping voltage to a second value, said second value corresponding to a value of q z of at least 0.7 wherein q z is proportional to said RF trapping voltage and inversely proportional to the mass of said ions; e. applying a fixed frequency with the second supplementary waveform, f. simultaneously carrying out steps (b) and (c) and then simultaneously carrying out steps (d) and (e) wherein the waveform of said first supplementary waveform in step (b) and (c) is a composite of the secular frequencies corresponding to the m/z for the ions which are to be ejected during the trapping, obtaining said composite by adding together, at selected points in time, the instantaneous voltage of each said secular frequency for each said ion, wherein the amplitudes A i and A n of the said secular frequencies for first ions of mass m i and charge z i are related to ions of mass m n and charge z n such that ##EQU5## where 0.5≦x≦1.5.

Claim 6

The method of claim 3 wherein said composite is corrected for non-uniform frequency response in the electronic circuits.

Claim 7

The method of claim 3 wherein said composite only includes contributions for ions if their corresponding secular frequency differs by more than an arbitrarily selectable amount.

Claim 8

The method of claim 5 wherein the relative phase of the said secular frequencies are selected so that two adjacent frequencies do not have the same phase.

Claim 9

The method of claim 5 wherein said relative phase of the said secular adjacent frequencies are rotated 90° relative to one another.

Claim 10

The method of claim 6 wherein said relative phase of the said secular frequencies are determined by a random number generator.

Claim 11

In a method for isolating a single selected ion having a mass m(p) employing a quadrupole ion trap (QIT) system, said QIT system having a ring electrode, a pair of end caps, means for introducing a sample, an RF trapping voltage source having a trapping frequency F connected to said ring electrode, a first supplementary waveform connected to said end caps, and a second supplementary waveform connected to said end caps, said method for selectively trapping and isolating a selected parent ion including: a. establishing said RF trapping voltage at a first value to enable retention of a large mass range of ions in said ion trap, said value sufficiently low to correspond to the best trapping efficiency; b. forming or injecting ions from a sample in said QIT; c. applying said first supplementary RF waveform to said end caps to resonantly reject selected ions; The improved method comprising; (i) simultaneously carrying out steps (b) amd (c); obtaining said first supplementary RF waveform by creating a composite of secular frequencies corresponding to the m/z for the ions which are to be ejected, said composite obtained by adding together, at selected points of time, the instantaneous amplitude, of each said secular frequency for each said ion to be ejected, wherein the amplitudes A i and A n of respective said secular frequencies are related such that the ratio of their amplitudes for corresponding secular frequencies are inversely proportional to the m/z ration for the corresponding ions of mass m i and charge z i in relation to ions of mass m n and charge z n according to the equation, ##EQU6## where 0.5≦x≦1.5, and where n and i are any different ions simultaneously stored in said QIT, (ii) after completing steps (a) through (c), increasing the RF trapping voltage to a value to place said m(p) ion to be isolated at a q z >0.7 to enable secular frequency for ion m(p)+1 to be approximately 1000 Hz displaced from the secular frequency for ion m(p); and (iii) repeating steps (c) to isolate m(p) in said QIT.

Claim 12

In a method for isolating a single selected ion having a mass m(p) employing a quadrupole ion trap (QIT) system, said QIT system having a ring electrode, a pair of end caps, means for introducing a sample, an RF trapping voltage source having a trapping frequency F connected to said ring electrode, a first supplementary waveform connected to said end caps, and a second supplementary waveform connected to said end caps, said method for selectively trapping and isolating a selected parent ion including: a. establishing said RF trapping voltage at a first value to enable retention of a large mass range of ions in said ion trap, said value sufficiently low to correspond to the best trapping efficiency; b. forming or injecting ions from a sample in said QIT; c. applying said first supplementary RF waveform to said end caps to resonantly reject selected ions; The improved method comprising; (i) simultaneously carrying out steps (b) amd (c); obtaining said first supplementary RF waveform by creating a composite of secular frequencies corresponding to the m/z for the ions which are to be ejected, said composite obtained by adding together, at selected points of time, the instantaneous amplitude, of each said secular frequency for each said ion to be ejected, wherein the amplitudes A i and A n of respective said secular frequencies are related such that the ratio of their amplitudes for corresponding secular frequencies are inversely proportional to the m/z ration for the corresponding ions of mass m i and charge z i in relation to ions of mass m n and charge z n according to the equation, ##EQU6## where 0.5≦x≦1.5, and where n and i are any different ions simultaneously stored in said QIT, (ii) after completing steps (a) through (c), increasing the RF trapping voltage to a value to place said m(p) ion to be isolated at a q z >0.7 to enable secular frequency for ion m(p)+1 to be approximately 1000 Hz displaced from the secular frequency for ion m(p); and (iii) repeating steps (c) to isolate m(p) in said QIT.

Claim 13

The method of claim 9 wherein x=1.0.

Claim 14

The method of claim 10 wherein the said composite only includes contributions for ions if their secular frequencies differ by more than a selected amount.

Claim 15

The method of claim 11 wherein the composite includes a compensation such that the amplitude A i and A n are reduced by a selectable percentage if the secular frequencies corresponding to ion i and ion n are within a selectable frequency interval of an ion desired to be stored.