Methods for performing multiple sequential reactions on a matrix

Claim 1

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c to yield the second reagent covalently bound to said surface at said modified loci; and (f) repeating step (e) with the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (d) until the synthesis of different compounds at each of at least 20 loci is completed.

Claim 2

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c to yield the second reagent covalently bound to said surface at said modified loci; and (f) repeating step (e) with the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (d) until the synthesis of different compounds at each of at least 20 loci is completed.

Claim 6

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.

Claim 7

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.

Claim 11

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected nucleotides, thereby forming oligonucleotides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of oligonucleotides at each of at least 20 said loci is completed.

Claim 12

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected nucleotides, thereby forming oligonucleotides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of oligonucleotides at each of at least 20 said loci is completed.

Claim 16

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first activating reagent of 0.8M zinc bromide in 9:1 nitromethane:isopropanol, wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected nucleotides, thereby forming oligonucleotides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of oligonucleotides at each of at least 20 said loci is completed.

Claim 17

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised of a porous material, and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying through a single reagent dispenser to a first locus of said surface at least one microdrop of a first activating reagent of 0.8M zinc bromide in 9:1 nitromethane:isopropanol, wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying at least one microdrop of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected nucleotides, thereby forming oligonucleotides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of oligonucleotides at each of at least 20 said loci is completed.

Claim 18

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying by a pulse through a piezoelectric jet head single reagent dispenser, to a first locus of said surface a quantity of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying a quantity of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.

Claim 19

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein said substrate is comprised a porous material, comprised of a sheet having internal straight, essentially parallel pores and wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying by a pulse through a piezoelectric jet head single reagent dispenser, to a first locus of said surface a quantity of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds; (b) displacing said single reagent dispenser relative to said surface and applying a quantity of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.

Claim 23

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying by a pulse through a piezoelectric jet head single reagent dispenser to a first locus of said surface a quantity of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds, wherein said piezoelectrectric jet head is positioned at a predetermined distance from said substrate, wherein said predetermined distance is less than the separation distance required for free droplet formation, whereby a smaller volume of liquid reagent is delivered to said substrate per microdrop as compared to the volume per microdrop when a droplet is allowed to form before contact with said substrate; (b) displacing said single reagent dispenser relative to said surface and applying a quantity of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.

Claim 24

A method of preparing a substrate having a plurality of non-contiguous microdrop-sized loci on a surface of said substrate, wherein at each of said loci a compound is covalently attached to or beneath said surface, comprising the steps of: (a) applying by a pulse through a piezoelectric jet head single reagent dispenser to a first locus of said surface a quantity of a first liquid activating reagent wherein said reagent modifies said surface at said first locus to activate said surface for forming covalent bonds, wherein said piezoelectrectric jet head is positioned at a predetermined distance from said substrate, wherein said predetermined distance is less than the separation distance required for free droplet formation, whereby a smaller volume of liquid reagent is delivered to said substrate per microdrop as compared to the volume per microdrop when a droplet is allowed to form before contact with said substrate; (b) displacing said single reagent dispenser relative to said surface and applying a quantity of said first activating reagent to said surface at a second locus; (c) optionally repeating step (b) at a third and subsequent loci, each such locus thereby becoming a modified locus; (d) washing the substrate to remove excess reagent; (e) applying a quantity of a second reagent to the entire substrate, including loci modified by steps a, b and c, wherein said second reagent comprises protected or unprotected amino acids, thereby forming polypeptides covalently attached to said surface at said modified loci; and (f) repeating step (e) with the same the same or a different second reagent where the same or different loci have been modified in accordance with steps (a) through (c) until the synthesis of polypeptides at each of at least 20 said loci is completed.