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US5623049A Expired / Lapsed US ⏱️ 0.0 years remaining

Nucleic acid-binding oligomers possessing N-branching for therapy and diagnostics

Assignee: Bayer AG
•
Filing: 1994-09-06
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Granted: 1997-04-22
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Expires: 2014-09-06
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Abstract

Abstract The invention relates to nucleic acid-binding oligomers possessing N-branching of the general formula (I), ##STR1## and their monomers, where the individual radicals have the meaning given in the description, and to their use as medicaments or as aids in diagnostics.

Inventors

  • 👤 Antonius L obberding
  • 👤 Burkhard Mielke
  • 👤 Christoph Schwemler
  • 👤 Eckhard Schwenner
  • 👤 Udo Stropp
  • 👤 Wolfgang Springer
  • 👤 Axel Kretschmer
  • 👤 Thorsten P otter

Bibliographic Details

Application Number —
Jurisdiction US
Data Source google_patents
Last Synchronized 2026-11-05 18:22
CPC Classifications
C; C07; C07D; C07D239/00; C07D239/02; C07D239/24; C07D239/28; C07D239/46; C07D239/52; C07D239/54; A; A61; A61P; A61P31/00; A61P31/12; C07D403/00; C07D403/02; C07D403/06; C07D473/00; C07D473/02; C07D473/18; C07D473/26; C07D473/28; C07D473/30; C07D473/32; C07D473/34; C07K; C07K14/00; C07K14/001; C07K14/003; C07K5/00; C07K5/04; C07K5/06; C07K5/06008; C07K5/06017; C07K5/06026; A61K; A61K38/00

Claims Analysis

Total Claims: 18
Claim 1
Independent Claim 303 words
A compound of the formula I ##STR13## in which A represents --(CH 2 ) n - or --CO--, B represents all natural or unnatural nucleobases, or derivatives derived therefrom by chemical modification, or halogenated precursors thereof, optionally substituted on the amino groups by protective groups selected from the group consisting of acetyl, trifluoroacetyl, trichloroacetyl, benzoyl, phenylacetyl, benzyloxycarbonyl, tertbutyloxycarbonyl, allyloxycarbonyl or (9-fluorenyl)methoxycarbonyl, or other protective groups which are customary in peptide and nucleic acid chemistry, or possessing free amino groups, D represents --(CO) p --, E and G, independently of each other, represent --CHR--, where R represents H or a residue of a natural or unnatural amino acid selected from the group consisting of glycine, alanine, valine, leucine, isoleucine, serine, threonine, cysteine, methionine, phenylalanine, tyrosine, histidine, tryptophan, lysine, ornithine, asparagine, aspartic acid, glutamine, glutamic acid, arginine, proline, hydroxyproline or sarcosine, dehydroamino acids selected from the group consisting of dehydroalanine or dehydro-α-aminobutyric acid, phenylglycine, 4-nitrophenylalanine, 3-nitrophenylalanine, 2-nitrophenylalanine, 2-, 3- or 4-aminophenylalanine, 3,4-dichlorophenylalanine, 4-iodophenylalanine, 4-methoxyphenylalanine, 1-triazolylalanine, 2-pyridylalanine, 3-pyridylalanine, 4-pyridylalanine, 1-naphthylalanine or 2-naphthylalanine, optionally possessing protective groups, in their D or L form, or, optionally, E and G are linked together via an alkyl chain --(CH 2 ) q --, K represents --CO--, --SO 2 -- or --CH 2 --, L can be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, M can, independently of L, be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, m can be 0, 1, 2 or 3, n can be 0, 1, 2, 3 or 4, p can be 0, 1 or 2, q can be 0, 1 or 2, and s can assume values of between 1 and 30 containing the radical of a compound selected from the group consisting of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline, N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-trans-proline, and 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)acetyl]-L-trans-proline.
Claim 2
Dependent Claim 303 words
A compound of the formula I ##STR13## in which A represents --(CH 2 ) n - or --CO--, B represents all natural or unnatural nucleobases, or derivatives derived therefrom by chemical modification, or halogenated precursors thereof, optionally substituted on the amino groups by protective groups selected from the group consisting of acetyl, trifluoroacetyl, trichloroacetyl, benzoyl, phenylacetyl, benzyloxycarbonyl, tertbutyloxycarbonyl, allyloxycarbonyl or (9-fluorenyl)methoxycarbonyl, or other protective groups which are customary in peptide and nucleic acid chemistry, or possessing free amino groups, D represents --(CO) p --, E and G, independently of each other, represent --CHR--, where R represents H or a residue of a natural or unnatural amino acid selected from the group consisting of glycine, alanine, valine, leucine, isoleucine, serine, threonine, cysteine, methionine, phenylalanine, tyrosine, histidine, tryptophan, lysine, ornithine, asparagine, aspartic acid, glutamine, glutamic acid, arginine, proline, hydroxyproline or sarcosine, dehydroamino acids selected from the group consisting of dehydroalanine or dehydro-α-aminobutyric acid, phenylglycine, 4-nitrophenylalanine, 3-nitrophenylalanine, 2-nitrophenylalanine, 2-, 3- or 4-aminophenylalanine, 3,4-dichlorophenylalanine, 4-iodophenylalanine, 4-methoxyphenylalanine, 1-triazolylalanine, 2-pyridylalanine, 3-pyridylalanine, 4-pyridylalanine, 1-naphthylalanine or 2-naphthylalanine, optionally possessing protective groups, in their D or L form, or, optionally, E and G are linked together via an alkyl chain --(CH 2 ) q --, K represents --CO--, --SO 2 -- or --CH 2 --, L can be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, M can, independently of L, be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, m can be 0, 1, 2 or 3, n can be 0, 1, 2, 3 or 4, p can be 0, 1 or 2, q can be 0, 1 or 2, and s can assume values of between 1 and 30 containing the radical of a compound selected from the group consisting of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline, N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-trans-proline, and 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)acetyl]-L-trans-proline.
Claim 3
Dependent Claim 268 words
A compound of the formula I according to claim 1 in which A represents --(CH 2 ) n -- or --CO--, B represents all natural nucleobases or halogenated precursors thereof, optionally substituted on the amino groups by protective groups selected from the group consisting of acetyl, trifluoroacetyl, trichloroacetyl, benzoyl, phenylacetyl, benzyloxycarbonyl, tert-butyloxycarbonyl, allyloxycarbonyl or (9-fluorenyl)methoxycarbonyl, or other protective groups which are customary in peptide and nucleic acid chemistry, or possessing free amino groups, D represents --(CO) -p --, E and G, independently of each other, represent --CHR--, where R represents H or a residue of a natural or unnatural amino acid selected from the group consisting of glycine, alanine, valine, leucine, isoleucine, serine, threonine, cysteine, methionine, phenylalanine, tyrosine, histidine, triptophan, lysine, ornithine, asparagine, aspartic acid, glutamine, glutamic acid, arginine, proline, hydroxyproline or sarcosine, dehydroamino acids selected from the group consisting of dehydroalanine or dehydro-α-aminobutyric acid, other unnatural amino acids selected from the group consisting of phenylglycine, 2-pyridylalanine, 3-pyridylalanine, 4-pyridylalanine, 1-naphthylalanine or 2-naphthylalanine, optionally possessing protective groups, in their D or L form, or, optionally, E and G are linked together via an alkyl chain --(CH 2 ) q --, K can be --CO--, --SO 2 -- or --CH 2 --, L can be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, M can, independently of L, be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, m can be 0, 1, 2 or 3, n can be 0, 1, 2 or 3, p can be 0 or 1, q can be 0, 1 or 2, and s can assume values of between 3 and 20.
Claim 4
Dependent Claim 232 words
A compound of the formula (I) according to claim 1 in which A represents --(CH 2 ) n -- or --CO--, B represents all natural nucleobases or halogenated precursors thereof, optionally substituted on the amino groups by protective groups selected from the group consisting of acetyl, trifluoroacetyl, trichloroacetyl, benzoyl, phenylacetyl, benzyloxycarbonyl, tert-butyloxycarbonyl, allyloxycarbonyl or (9-fluorenyl)methoxycarbonyl, or other protective groups which are customary in peptide and nucleic acid chemistry, or possessing free amino groups, D represents --(CO) p --, E and G, independently of each other, represent --CHR--, where R represents H or a residue of a natural or unnatural amino acid selected from the group consisting of glycine, alanine, valine, leucine, isoleucine, serine, threonine, cysteine, methionine, phenylalanine, tyrosine, histidine, tryptophan, lysine, ornithine, asparagine, aspartic acid, glutamine, glutamic acid, arginine, proline, hydroxyproline, sarcosine, dehydroalanine or dehydro-α-aminobutyric acid, optionally possessing protective groups, in their D or L form, or, optionally, E and G are linked together via an alkyl chain --(CH 2 ) q --, K is --CO--, L can be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, M can, independently of L, be a carrier system, reporter ligand, a solubility-mediating group or hydrogen, m can be 0, 1 or 2, n can be 0, 1, 2 or 3, p can be 0 or 1, q can be 0 or 1, and s can assume values of between 3 and 18.
Claim 5
Dependent Claim 11 words
A compound according to claim 1, containing the radical of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline.
Claim 6
Dependent Claim 13 words
A compound according to claim 1, containing the radical of N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline.
Claim 7
Dependent Claim 11 words
A compound according to claim 1, containing the radical of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline.
Claim 8
Dependent Claim 13 words
A compound according to claim 1, containing the radical of 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)-acetyl]L-cis-proline.
Claim 9
Dependent Claim 14 words
A compound according to claim 1, containing the radical of 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl )acetyl]-L-trans-proline.
Claim 10
Dependent Claim 13 words
A compound according to claim 1, containing the radical of 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)-acetyl]-L-trans-proline.
Claim 11
Dependent Claim 23 words
A compound selected from the group consisting of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline, N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)-acetyl]-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-trans-proline, and 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)-acetyl]-L-trans-proline.
Claim 12
Dependent Claim 23 words
A compound selected from the group consisting of 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline, N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)-acetyl]-L-cis-proline, 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9-yl)acetyl]-L-trans-proline, and 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)-acetyl]-L-trans-proline.
Claim 13
Dependent Claim 11 words
A compound according to claim 10, wherein such compound is 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)acetyl]-L-cis-proline.
Claim 14
Dependent Claim 13 words
A compound according to claim 10, wherein such compound is N-[(N 4 -benzoylcytosin-1-yl)acetyl]-4-tert-butyloxycarbonylamino-L-cis-proline.
Claim 15
Dependent Claim 11 words
A compound according to claim 10, wherein such compound is 4-tert-butyloxycarbonylamino-N-[(thymin-1-yl)-acetyl]-L-trans-proline.
Claim 16
Dependent Claim 14 words
A compound according to claim 10, wherein such compound is 4-tert-butyloxycarbonylamino-N-[( N 6 -benzyloxycarbonyl-adenin-9-yl)-acetyl]L-cis-proline.
Claim 17
Dependent Claim 13 words
A compound according to claim 10, wherein such compound is 4-tert-butyloxycarbonylamino-N-[(N 6 -benzyloxycarbonyl-adenin-9yl)acetyl]-L-trans-proline.
Claim 18
Dependent Claim 13 words
A compound according to claim 10, wherein such compound is 4-tert-butyloxycarbonylamino-N-[(N 4 -benzyloxycarbonyl-cytosin-1-yl)-acetyl]-L-trans-proline.

References Cited (Backward Citations)

WO1986005518A1 Cited
EP0300796A2 Cited
WO1992018518A1 Cited
WO1992020702A1 Cited
WO1992020703A1 Cited
WO1993004701A1 Cited

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