Abstract A computer graphics system for modeling chemical molecules includes simultaneous two-dimensional and three-dimensional display of models of molecules from a single data set, and allows a user to edit in either two dimensions or three dimensions. A two-dimensional model may be stylized while a three-dimensional model of the same molecule remains chemically (geometrically) correct. The system has editing tools for use in both two dimensions and three dimensions, and changes made in one mode are immediately reflected in the other, and the editing tools include manipulation components for the user to display on elements of a model, and to use to move parts of a model of a molecule relative to other parts. The system includes techniques for structure determination and display that significantly reduce the computer power required to perform system functions, rendering techniques formally reserved to supercomputers usable on smaller computer platforms. Physically based modeling is included, allowing the user to perturb the geometry of a model and to investigate interactively the effects of perturbation according to a dynamic force equation. The system also includes a procedure for displaying multiple models of molecules and performing docking studies between the models.
A computer graphics system to display a model of atoms and molecules and to investigate chemical and physical properties of said atoms and molecules comprising: a processor; a controller coupled to said processor to direct operations of said graphics system; a memory coupled to said processor to store dam relative to known atoms and molecules, and intra-molecular forces between atoms in said molecules; a monitor coupled to said processor to provide a display of information and said model of the user selected atoms and molecules from said data in said memory with a three-dimensional technique used by chemists to illustrate a relationship between atoms and molecules, said model displayed as graphical elements representing atoms located at atomic center positions with graphical coordinates of said atomic centers relative to each other stored in said memory, and connecting graphical elements between said atomic centers representing bonds therebetween; and a pointer manipulation device coupled to said processor to provide a user a capability to dynamically model said molecular model by selecting data relative to atoms and molecules from said memory for said model, to conformationally alter a molecular model, and to direct operation of said controller; wherein said controller permits limited movement of an atomic center position with respect to the atomic center positions of other atoms within said model to dynamically model said molecular model by conformationally altering said three-dimensional displayed molecular model in keeping with said intra-molecular forces between atoms of said molecular model under the operation of said pointer manipulation device.
Claim 2
Dependent Claim
251 words
A computer graphics system to display a model of atoms and molecules and to investigate chemical and physical properties of said atoms and molecules comprising: a processor; a controller coupled to said processor to direct operations of said graphics system; a memory coupled to said processor to store dam relative to known atoms and molecules, and intra-molecular forces between atoms in said molecules; a monitor coupled to said processor to provide a display of information and said model of the user selected atoms and molecules from said data in said memory with a three-dimensional technique used by chemists to illustrate a relationship between atoms and molecules, said model displayed as graphical elements representing atoms located at atomic center positions with graphical coordinates of said atomic centers relative to each other stored in said memory, and connecting graphical elements between said atomic centers representing bonds therebetween; and a pointer manipulation device coupled to said processor to provide a user a capability to dynamically model said molecular model by selecting data relative to atoms and molecules from said memory for said model, to conformationally alter a molecular model, and to direct operation of said controller; wherein said controller permits limited movement of an atomic center position with respect to the atomic center positions of other atoms within said model to dynamically model said molecular model by conformationally altering said three-dimensional displayed molecular model in keeping with said intra-molecular forces between atoms of said molecular model under the operation of said pointer manipulation device.
Claim 3
Dependent Claim
19 words
A computer graphics system as in claim 1 wherein said three dimensional models comprise one or more ring structures.
Claim 4
Dependent Claim
60 words
A system as in claim 1 wherein said controller, in response to user selection of a graphical element of one of said three-dimensional models, displays a pictorial manipulation element on said selected graphical element for a user to manipulate in order to move the selected graphical element to change the conformation of the atoms and molecules of said three-dimensional model.