Efficient screening methods for low probability variants

Claim 1

A method for screening organisms selected from the group consisting of viruses and cells, the viruses and cells being related in that the viruses are capable of lysing the cells, wherein said organisms may include a variant organism producing an antigenic marker, said method comprising combining in a gel: (1) said cells, (2) said viruses, and (3) a labeled receptor composition for said antigenic marker, under conditions where said labeled receptor composition and said marker combine to result in a non-diffusible aggregation; extracting labeled receptor which is not bound in said non-diffusible aggregation from said gel; and detecting said label in said gel at a location, said variant organism being present at that location.

Claim 2

A method for screening organisms selected from the group consisting of viruses and cells, the viruses and cells being related in that the viruses are capable of lysing the cells, wherein said organisms may include a variant organism producing an antigenic marker, said method comprising combining in a gel: (1) said cells, (2) said viruses, and (3) a labeled receptor composition for said antigenic marker, under conditions where said labeled receptor composition and said marker combine to result in a non-diffusible aggregation; extracting labeled receptor which is not bound in said non-diffusible aggregation from said gel; and detecting said label in said gel at a location, said variant organism being present at that location.

Claim 5

A method according to any of claims 1, 2 or 3, wherein said gel is comprised of a thick gel lower layer substantially free of labeled receptor and a thin gel upper layer containing said labeled receptor and separated by said lower layer by a membrane having a molecular weight cutoff below the molecular weight of said labeled receptor.

Claim 6

An apparatus for use in screening organisms comprising an outer ring, internal to said outer ring, an inner ring extending into said outer ring only a portion of the height of said outer ring, said inner ring having an outer circumferential groove, an O-ring in said groove, and a membrane extending across the inner ring, with its outer portion locked between said inner and outer rings, said membrane having a molecular weight cutoff of less than about 100,000.

Claim 7

An apparatus for use in screening organisms comprising an outer ring, internal to said outer ring, an inner ring extending into said outer ring only a portion of the height of said outer ring, said inner ring having an outer circumferential groove, an O-ring in said groove, and a membrane extending across the inner ring, with its outer portion locked between said inner and outer rings, said membrane having a molecular weight cutoff of less than about 100,000.

Claim 9

A method for screening organisms selected from the group consisting of cells and viruses capable of lysing the cells, wherein said organisms may include a variant organism producing an antigenic ligand, said method employing a screening apparatus including a membrane having a preselected molecular weight cutoff which defines two chambers, said method comprising: combining said cells and said viruses in a liquid gel; pouring said liquid gel into one chamber of the screening apparatus to form first gel layer; forming a second gel layer in the other chamber either before or after said first gel layer has been formed, said second gel layer being free from cells and viruses; exposing the first gel layer to diffusible labeled antibody specific for the marker, whereby non-diffusible labeled aggregations are formed in the presence of said antigenic ligand; removing said second gel layer; extracting the diffusible labeled antibody from the first gel layer by immersion in an aqueous solution; and detecting said label in the first gel layer at a location which is indicative of the presence of said variant organism at that location.

Claim 10

A method for screening organisms selected from the group consisting of cells and viruses capable of lysing the cells, wherein said organisms may include a variant organism producing an antigenic ligand, said method employing a screening apparatus including a membrane having a preselected molecular weight cutoff which defines two chambers, said method comprising: combining said cells and said viruses in a liquid gel; pouring said liquid gel into one chamber of the screening apparatus to form first gel layer; forming a second gel layer in the other chamber either before or after said first gel layer has been formed, said second gel layer being free from cells and viruses; exposing the first gel layer to diffusible labeled antibody specific for the marker, whereby non-diffusible labeled aggregations are formed in the presence of said antigenic ligand; removing said second gel layer; extracting the diffusible labeled antibody from the first gel layer by immersion in an aqueous solution; and detecting said label in the first gel layer at a location which is indicative of the presence of said variant organism at that location.